NeoBio API

Constant Field Values


Contents
neobio.alignment.*

neobio.alignment.CharSequence
protected static final char COMMENT_CHAR 62

neobio.alignment.CrochemoreLandauZivUkelson
protected static final byte DIAGONAL_DIRECTION 2
protected static final byte LEFT_DIRECTION 1
protected static final byte STOP_DIRECTION 0
protected static final byte TOP_DIRECTION 3

neobio.alignment.CrochemoreLandauZivUkelsonLocalAlignment
protected static final byte TYPE_C_PATH 2
protected static final byte TYPE_CROSSING_PATH 0
protected static final byte TYPE_E_PATH 3
protected static final byte TYPE_S_PATH 1

neobio.alignment.FactorSequence
protected static final char COMMENT_CHAR 62

neobio.alignment.PairwiseAlignmentAlgorithm
protected static final char APPROXIMATE_MATCH_TAG 43
protected static final char GAP_CHARACTER 45
protected static final char GAP_TAG 32
protected static final char MATCH_TAG 124
protected static final char MISMATCH_TAG 32

neobio.alignment.ScoringMatrix
protected static final char COMMENT_CHAR 35
protected static final char INDEL_CHAR 42


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